After issuing the color change custom G-code, which is most likely

just M600, reset the internal retract counter, so that a retract
will happen after the firmware returns from M600 to the initial position.

Fixes "Blobs on print after manual color change #6362"

src/libslic3r/GCode.cpp

@@ -1646,6 +1646,10 @@ namespace ProcessLayer
                 else {
                     gcode += config.color_change_gcode;//ColorChangeCode;
                     gcode += "\n";
+                    //FIXME Tell G-code writer that M600 filled the extruder, thus the G-code writer shall reset the extruder to unretracted state after
+                    // return from M600. Thus the G-code generated by the following line is ignored.
+                    // see GH issue #6362
+                    gcodegen.writer().unretract();
                 }
 	        } 
 	        else